Package: SCIntRuler
Type: Package
Title: Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets
Version: 0.99.8
Authors@R: 
    person(given = "Yue", family = "Lyu", email = "yuelyu0521@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8912-6624"))
Description: The accumulation of single-cell RNA sequencing (scRNA-seq)
        studies highlights the potential benefits of integrating
        multiple datasets. By augmenting sample sizes and enhancing
        analytical robustness, integration can lead to more insightful
        biological conclusions. However, challenges arise due to the
        inherent diversity and batch discrepancies within and across
        studies. 'SCIntRuler' addresses these challenges by guiding the
        integration of multiple scRNA-seq datasets.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.0
Imports: Rcpp, Matrix, base, Seurat, SeuratObject, MatrixGenerics,
        SingleCellExperiment, SummarizedExperiment, dplyr, coin,
        harmony, ggplot2, gridExtra, cowplot, magrittr, stats
LinkingTo: Rcpp
URL: https://github.com/yuelyu21/SCIntRuler,
        https://yuelyu21.github.io/SCIntRuler/
BugReports: https://github.com/yuelyu21/SCIntRuler/issues
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Depends: R (>= 4.3.0)
LazyData: true
LazyDataCompression: xz
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://yuelyu21.r-universe.dev
Date/Publication: 2026-09-15 18:40:31 UTC
RemoteUrl: https://github.com/yuelyu21/scintruler
RemoteRef: HEAD
RemoteSha: 4ac21a071f629ba63c11362c8d95db3bcae2951b
NeedsCompilation: yes
Packaged: 2026-10-16 10:53:16 UTC; root
Author: Yue Lyu [aut, cre] (ORCID: <https://orcid.org/0000-0002-8912-6624>)
Maintainer: Yue Lyu <yuelyu0521@gmail.com>